EPIC bridges certification Bioinformatics Programmer - NGS, HL7, Nextflow or WDL,Python

Overview

Remote
$60 - $70
Contract - W2
Contract - 12 Month(s)

Skills

HL7
Slurm
SQL and PostgresQL
Python
EPIC bridges certification

Job Details

Please contact Abdul on "" OR email me at ""

Job Description:

This position is part of a multidisciplinary team of molecular pathologists, clinical lab scientists, variant scientists, and bioinformaticians analyzing clinical specimens using high throughput sequencing. As part of a recent UCLA-wide effort to expand in-house molecular diagnostics capabilities, you have a unique opportunity to design and deploy new software infrastructure for the Molecular Diagnostics Lab (MDL) at the Department of Pathology and Lab Medicine. A successful applicant will lead lab automation efforts, deployment of a Lab Information Management System (LIMS), and interoperability with a Lab Information System (LIS) managed by peers in UCLA Health IT.

Job Qualifications:

  • BS or MS in Computer Science or a related discipline
  • 3+ years experience and a strong aptitude for software design and engineering
  • Desire to learn and enjoys working in a team but can solve problems independently
  • Experience with human genetics data, especially on NGS DNAseq and RNAseq data Advanced skills in Python (experience with JavaScript is a plus) with attention to documentation and style
  • Intensive experience with GitHub and writing unit tests
  • Ability to focus on code reusability and scientific reproducibility of all work, manual or automated
  • Experience with command-line tools on Linux and BASH scripting/Unix command line
  • Reading and comprehending SQL and PostgresQL
  • Experience with workflow language such as Nextflow or WDL
  • Excellent written and verbal communication skills with both biologists and coders
  • Experience with High Performance Computing, Slurm, Azure Blob Storage, GitHub Actions preferred
  • EPIC bridges certification and experience sending/receiving HL7 preferred

Please contact Abdul on "" OR email me at ""

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