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Bioinformatics Pipeline Test Engineer

Katalyst Healthcares and Lifesciences

San Diego, California • 5d ago

Full-time

Bioinformatics Pipeline Junior Test Engineer

Katalyst Healthcares and Lifesciences

San Diego, California • 5d ago

Full-time

Test and Evaluation Engineer

Booz Allen Hamilton

San Diego, California • Today

Full-time

USD 86,900.00 - 198,000.00 per year

Test and Evaluation Engineer

Booz Allen Hamilton

San Diego, California • Today

Full-time

USD 86,900.00 - 198,000.00 per year

Bioinformatics Engineer II

Tempus

Remote or California • Today

Full-time

USD 90,000.00 - 140,000.00 per year

Sr Bioinformatics Software Engineer

Baylor Miraca Genetics Laboratories, LLC

Remote • Today

Full-time

Test & Trials Engineer

General Dynamics

San Diego, California • Today

Full-time

USD 86,400.00 - 131,400.00 per year

Sr. Software Engineer

Illumina, Inc.

San Diego, California • Today

Full-time

USD 129,400.00 - 194,000.00 per year

Staff Software Engineer

Illumina, Inc.

Remote or San Diego, California • Today

Full-time

USD 155,600.00 - 233,400.00 per year

Data Test Engineer

CACI International, Inc.

Remote • Today

Full-time

USD 75,200.00 - 158,100.00 per year

Bioinformatics Product Owner

OMG Technologies

Remote • 14d ago

Easy Apply

Contract

40 - 45

Test Engineer

Sky Solutions LLC

Remote or Hybrid in Tysons, Virginia • 8d ago

Easy Apply

Full-time, Third Party

Depends on Experience

Data Test Engineer

Sahi Softtech

Remote • 15d ago

Easy Apply

Full-time

Depends on Experience

Senior Manager of Software Engineering & DevOps (DSPE)

Natera, Inc.

Remote • Today

Full-time

USD 151,000.00 - 200,000.00 per year

Senior Data Scientist - Remote

Community Health Systems

Remote or Franklin, Tennessee • Today

Full-time

Data Scientist

Premier, Inc.

Remote • Today

Full-time

USD 72,000.00 - 120,000.00 per year

Big Data Testing Engineer

NetOrbit

Remote • Today

Full-time

Benchling Developer

Pantar Solutions, Inc.

Remote • Today

Easy Apply

Third Party, Contract

Depends on Experience

Test Engineer

ASM Research

Remote • Today

Full-time

Sr. Software Engineer/Tech Lead, Data & AI Engineering

Natera, Inc.

Remote • Today

Full-time

USD 150,400.00 - 188,000.00 per year

Job Details

Skills

Automated Testing
Collaboration
Amazon Web Services
Google Cloud
Google Cloud Platform
Problem Solving
Conflict Resolution
Communication
Life Sciences
Debugging
Workflow
Statistics
System Testing
Database
Scripting
Regression Testing
Test Strategy
Test Cases
Data Validation
Continuous Integration
Continuous Delivery
GitHub
GitLab
Microsoft Azure
DevOps
Amazon S3
Cloud Computing
Bioinformatics
Genomics
Next Generation Sequencing
Python
Testing
Quality Assurance
Git

Automated Testing
Collaboration
Amazon Web Services
Google Cloud
Google Cloud Platform
Problem Solving
Conflict Resolution
Communication
Life Sciences
Debugging
Workflow
Statistics
System Testing
Database
Scripting
Regression Testing
Test Strategy
Test Cases
Data Validation
Continuous Integration
Continuous Delivery
GitHub
GitLab
Microsoft Azure
DevOps
Amazon S3
Cloud Computing
Bioinformatics
Genomics
Next Generation Sequencing
Python
Testing
Quality Assurance
Git

Summary

Job Description:
We are seeking a Bioinformatics Test Engineer to validate and ensure the quality of NGS data pipelines and bioinformatics workflows. The role requires a strong blend of bioinformatics knowledge, QA expertise, and automation skills.
Responsibilities:

Design and execute testing strategies for NGS pipelines (alignment, variant calling, annotation).
Perform data validation, regression testing, and discrepancy analysis.
Develop automated test scripts (Python).
Translate requirements into test cases and validation criteria.
Work with CI/CD pipelines and cloud-based workflows.
Collaborate with cross-functional teams to ensure data accuracy and reliability.

Requirements:

Strong understanding of NGS workflows (FASTQ, BAM, VCF).
Experience in bioinformatics pipeline testing or QA.
Proficiency in Python scripting.
Hands-on with Git and CI/CD tools.
Experience with cloud platforms (AWS/Google Cloud Platform/Azure) and data pipelines.
Strong problem-solving and communication skills.

Preferred Skills:

Experience in biotech/life sciences domain.
Familiarity with Nextflow, Snakemake, or similar workflows.
Exposure to regulated environments (CLIA/FDA).
What We're Looking For.
Strong testing mindset + hands-on engineering skills.
bility to debug pipelines and explain thought process clearly.
Experience with real-world data workflows (not just academic projects).
Mentions NGS pipelines + testing together.
Has Python + Git + CI/CD.
Mentions variant calling / VCF validation.
Worked on cloud or production pipelines.
Reject or deprioritize if:
Only academic bioinformatics (no testing/QA).
Only statistics validation (no system testing).
No Python or automation.
No infra experience (cloud / CI/CD / DB).
Only local scripts, no real pipelines.

Other High Priority Keywords:

Variant Calling.
Pipeline Testing.
Regression Testing.
Test Strategy OR Test Case Design.
Data Validation.
Golden Dataset OR Reference Dataset.
CI/CD OR "GitHub Actions " OR GitLab OR "Azure DevOps ".
WS OR S3 OR Cloud.
Nextflow OR Snakemake OR WDL OR Cromwell.
utomation Testing.

Must Have:

Bioinformatics OR Genomics.
NGS OR "Next Generation Sequencing ".
VCF OR BAM OR FASTQ.
Python.
Testing OR QA OR "Quality Engineer " OR Validation.
Git.

Employers have access to artificial intelligence language tools (“AI”) that help generate and enhance job descriptions and AI may have been used to create this description. The position description has been reviewed for accuracy and Dice believes it to correctly reflect the job opportunity.

Dice Id: 91116760
Position Id: 379f193755d693802ed4e928387c862a
Posted 30+ days ago

Fitment

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Job Details

Skills

Automated Testing
Collaboration
Amazon Web Services
Google Cloud
Google Cloud Platform
Problem Solving
Conflict Resolution
Communication
Life Sciences
Debugging
Workflow
Statistics
System Testing
Database
Scripting
Regression Testing
Test Strategy
Test Cases
Data Validation
Continuous Integration
Continuous Delivery
GitHub
GitLab
Microsoft Azure
DevOps
Amazon S3
Cloud Computing
Bioinformatics
Genomics
Next Generation Sequencing
Python
Testing
Quality Assurance
Git

Automated Testing
Collaboration
Amazon Web Services
Google Cloud
Google Cloud Platform
Problem Solving
Conflict Resolution
Communication
Life Sciences
Debugging
Workflow
Statistics
System Testing
Database
Scripting
Regression Testing
Test Strategy
Test Cases
Data Validation
Continuous Integration
Continuous Delivery
GitHub
GitLab
Microsoft Azure
DevOps
Amazon S3
Cloud Computing
Bioinformatics
Genomics
Next Generation Sequencing
Python
Testing
Quality Assurance
Git

Summary

Design and execute testing strategies for NGS pipelines (alignment, variant calling, annotation).
Perform data validation, regression testing, and discrepancy analysis.
Develop automated test scripts (Python).
Translate requirements into test cases and validation criteria.
Work with CI/CD pipelines and cloud-based workflows.
Collaborate with cross-functional teams to ensure data accuracy and reliability.

Requirements:

Strong understanding of NGS workflows (FASTQ, BAM, VCF).
Experience in bioinformatics pipeline testing or QA.
Proficiency in Python scripting.
Hands-on with Git and CI/CD tools.
Experience with cloud platforms (AWS/Google Cloud Platform/Azure) and data pipelines.
Strong problem-solving and communication skills.

Preferred Skills:

Experience in biotech/life sciences domain.
Familiarity with Nextflow, Snakemake, or similar workflows.
Exposure to regulated environments (CLIA/FDA).
What We're Looking For.
Strong testing mindset + hands-on engineering skills.
bility to debug pipelines and explain thought process clearly.
Experience with real-world data workflows (not just academic projects).
Mentions NGS pipelines + testing together.
Has Python + Git + CI/CD.
Mentions variant calling / VCF validation.
Worked on cloud or production pipelines.
Reject or deprioritize if:
Only academic bioinformatics (no testing/QA).
Only statistics validation (no system testing).
No Python or automation.
No infra experience (cloud / CI/CD / DB).
Only local scripts, no real pipelines.

Other High Priority Keywords:

Variant Calling.
Pipeline Testing.
Regression Testing.
Test Strategy OR Test Case Design.
Data Validation.
Golden Dataset OR Reference Dataset.
CI/CD OR "GitHub Actions " OR GitLab OR "Azure DevOps ".
WS OR S3 OR Cloud.
Nextflow OR Snakemake OR WDL OR Cromwell.
utomation Testing.

Must Have:

Bioinformatics OR Genomics.
NGS OR "Next Generation Sequencing ".
VCF OR BAM OR FASTQ.
Python.
Testing OR QA OR "Quality Engineer " OR Validation.
Git.

Dice Id: 91116760
Position Id: 379f193755d693802ed4e928387c862a
Posted 30+ days ago

Fitment

Dice Job Match Score™

To see how well you match this job, please log in or create an account.

Once logged in, be sure to complete your profile to get the most accurate match score.

Create job alert

Never miss an opportunity! Create an alert based on the job you applied for.

Similar Jobs

Systems Support Engineer 1

San Diego, California

•

Today

Full-time

USD 74,900.00 - 112,300.00 per year

AI QA Engineer

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Full-time

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Bioinformatics Engineer II

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Senior Data Quality Engineer

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Full-time