Aptask Global Workforce (AGW) is seeking a Bioinformatics Analyst for a 6+ month contract position. This is a hybrid role located in South San Francisco, CA or can be fully remote. Our client's African Genomics Program seeks a motivated Bioinformatics Analyst to implement and operate analytical pipelines for long-read sequencing data. This work will support the Program's goal of increasing the diversity of genetic datasets available for research. Key responsibilities include establishing and running workflows for short and long-read sequencing data and methylation data as well as performing general bioinformatics tasks. The successful candidate will handle day-to-day data ingestion, quality control (QC), and variant calling and methylation data. This role is highly collaborative, requiring regular coordination with international teams to ensure data flows smoothly and results are accurately reported.
Responsibilities: - Pipeline Implementation: Set up and maintain scalable bioinformatics pipelines for Oxford Nanopore (ONT) long-read WGS and methylation data
- Data Operations: Execute workflows for data processing and interpretation. Manage the intake of raw sequencing and methylation data, perform QC checks at multiple stages, and flag anomalies in preliminary results
- Documentation: Maintain clear documentation of pipeline runs, QC metrics, and code updates via git
- Operational Collaboration: Serve as the technical point of contact for data tasks, coordinating data transfers and status updates with global collaborators, including attending meetings with Africa-based teams (East Africa Time Zone)
Requirements: - Masters or undergraduate degree in Bioinformatics, Computational Biology, or a related field, with 2+ years of direct, hands-on experience in bioinformatics
- Proficiency in Python and shell scripting (Bash)
- Experience with high-performance computing (HPC) or cloud environments (AWS)
- Hands-on experience building and running Next-Generation Sequencing (NGS) bioinformatics pipelines (e.g., Nextflow, Snakemake) and direct experience working with human Whole Genome Sequencing (WGS) data on Oxford Nanopore (ONT), including basecalling, structural variants, or methylation
- Competency with git for code and documentation tracking
- Strong communication skills for coordinating with global collaborators across different time zones
- Proactive mindset with the ability to work independently on technical tasks while following project guidelines
Desired skills: - Knowledge on T2T reference standards and pangenome graphs is a plus
Pay range: up to $58.67 per hour
Only candidates available and ready to work directly as Aptask Global Workforce (AGW) employees will be considered for this position. If you have the described qualifications and are interested in this exciting opportunity, apply today! Aptask Global Workforce (AGW) ApTask Global Workforce (AGW) is a certified Minority and Veteran workforce solutions company. AGW delivers operational, clinical, lab and professional talent with a strong focus on healthcare and life sciences. The company supports clients with reliable staffing, program expertise and a commitment to quality, speed and consistent delivery.
Benefits of working with ApTask Global Workforce include: - Medical
- Dental
- Vision
- Sick Pay (for applicable states/municipalities)
Our team stays close to the process and is here to guide you every step of the way. To learn more, please visit our website ;br>
ApTask Global Workforce is an Equal Opportunity Employer. Candidates will receive consideration without regard to their race, color, religion, sex, sexual orientation, gender identity, national origin, disability or status as a protected veteran.
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